IL_3JAN_090

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUGAG*CGAAAG

Length

11 nucleotides

Bulged bases

3JAN|1|5|A|2512, 3JAN|1|5|A|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_090 not in the Motif Atlas

Homologous match to IL_8C3A_067

Geometric discrepancy: 0.291

The information below is about IL_8C3A_067

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

3JAN|1|5|C|2446
3JAN|1|5|U|2447
3JAN|1|5|G|2448
3JAN|1|5|A|2449
3JAN|1|5|G|2450
*
3JAN|1|5|C|2509
3JAN|1|5|G|2510
3JAN|1|5|A|2511
3JAN|1|5|A|2512
3JAN|1|5|A|2513
3JAN|1|5|G|2514

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

Ribosomal protein uL2

Chain g

Ribosomal protein eL34

Chain j

Ribosomal protein eL37

Chain l

Ribosomal protein eL39