3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CUGAG*CGAAAG
Length
11 nucleotides
Bulged bases
3JAN|1|5|A|2512, 3JAN|1|5|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAN_090 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.291
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

3JAN|1|5|C|2446
3JAN|1|5|U|2447
3JAN|1|5|G|2448
3JAN|1|5|A|2449
3JAN|1|5|G|2450
*
3JAN|1|5|C|2509
3JAN|1|5|G|2510
3JAN|1|5|A|2511
3JAN|1|5|A|2512
3JAN|1|5|A|2513
3JAN|1|5|G|2514

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain A
Ribosomal protein uL2
Chain g
Ribosomal protein eL34
Chain j
Ribosomal protein eL37
Chain l
Ribosomal protein eL39

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