IL_3JAN_092
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GAGUGG*CGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_092 not in the Motif Atlas
- Geometric match to IL_5TBW_145
- Geometric discrepancy: 0.2463
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
3JAN|1|5|G|2542
3JAN|1|5|A|2543
3JAN|1|5|G|2544
3JAN|1|5|U|2545
3JAN|1|5|G|2546
3JAN|1|5|G|2547
*
3JAN|1|5|C|2772
3JAN|1|5|G|2773
3JAN|1|5|C|2774
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain k
- Ribosomal protein eL38
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