IL_3JAN_127
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GCU*GAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_127 not in the Motif Atlas
- Homologous match to IL_8P9A_330
- Geometric discrepancy: 0.1354
- The information below is about IL_8P9A_330
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
3JAN|1|5|G|4401
3JAN|1|5|C|4402
3JAN|1|5|U|4403
*
3JAN|1|5|G|4440
3JAN|1|5|A|4441
3JAN|1|5|U|4442
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain I
- Ribosomal protein uL16
- Chain b
- Ribosomal protein eL29
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