IL_3JAN_129

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

3JAN|1|5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_129 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.1316

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

3JAN|1|5|G|4405
3JAN|1|5|U|4406
3JAN|1|5|G|4407
*
3JAN|1|5|U|4435
3JAN|1|5|U|4436
3JAN|1|5|U|4437
3JAN|1|5|U|4438
3JAN|1|5|U|4439

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain I

Ribosomal protein uL16