IL_3JAN_132

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

3JAN|1|5|G|4522, 3JAN|1|5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_132 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1716

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

3JAN|1|5|C|4456
3JAN|1|5|U|4457
3JAN|1|5|C|4458
*
3JAN|1|5|G|4520
3JAN|1|5|U|4521
3JAN|1|5|G|4522
3JAN|1|5|A|4523
3JAN|1|5|G|4524

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain V

Ribosomal protein uL14