IL_3JAN_176

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_176 not in the Motif Atlas

Homologous match to IL_4V88_400

Geometric discrepancy: 0.3477

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

3JAN|1|S2|C|317
3JAN|1|S2|A|318
3JAN|1|S2|C|319
3JAN|1|S2|G|320
*
3JAN|1|S2|C|331
3JAN|1|S2|G|332
3JAN|1|S2|G|333

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

Ribosomal protein eS6