IL_3JAN_182

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

3JAN|1|S2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_182 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.1755

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3JAN|1|S2|U|487
3JAN|1|S2|U|488
3JAN|1|S2|A|489
*
3JAN|1|S2|U|511
3JAN|1|S2|A|512

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S1

SRP9

Chain S4

SRP14

Chain SE

Ribosomal protein eS4

Chain SJ

Ribosomal protein uS4

Chain SY

Ribosomal protein eS24