IL_3JAN_183

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_183 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.2803

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

3JAN|1|S2|C|491
3JAN|1|S2|C|492
3JAN|1|S2|A|493
3JAN|1|S2|C|494
3JAN|1|S2|U|495
*
3JAN|1|S2|A|508
3JAN|1|S2|G|509

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SJ

Ribosomal protein uS4

Chain SY

Ribosomal protein eS24