IL_3JAN_196
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_196 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2705
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3JAN|1|S2|G|807
3JAN|1|S2|A|808
3JAN|1|S2|A|809
3JAN|1|S2|A|810
3JAN|1|S2|A|811
3JAN|1|S2|A|812
3JAN|1|S2|A|813
3JAN|1|S2|U|814
3JAN|1|S2|U|815
*
3JAN|1|S2|A|849
3JAN|1|S2|C|850
3JAN|1|S2|C|851
3JAN|1|S2|G|852
3JAN|1|S2|C|853
3JAN|1|S2|A|854
3JAN|1|S2|G|855
3JAN|1|S2|C|856
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- Ribosomal protein eS4
- Chain SJ
- Ribosomal protein uS4
- Chain SL
- Ribosomal protein uS17
- Chain SW
- Ribosomal protein uS8
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