3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
ACUA*UUCU
Length
8 nucleotides
Bulged bases
3JAN|1|S2|C|1403, 3JAN|1|S2|U|1404
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAN_222 not in the Motif Atlas
Homologous match to IL_4V88_456
Geometric discrepancy: 0.309
The information below is about IL_4V88_456
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_76458.1
Basepair signature
cWW-cSH-L-cWW
Number of instances in this motif group
2

Unit IDs

3JAN|1|S2|A|1402
3JAN|1|S2|C|1403
3JAN|1|S2|U|1404
3JAN|1|S2|A|1405
*
3JAN|1|S2|U|1441
3JAN|1|S2|U|1442
3JAN|1|S2|C|1443
3JAN|1|S2|U|1444

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SQ
Ribosomal protein uS9
Chain SU
Ribosomal protein uS10
Chain Sg
Ribosomal protein RACK1

Coloring options:


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