IL_3JAN_227

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UACG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_227 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3962

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JAN|1|S2|U|1560
3JAN|1|S2|A|1561
3JAN|1|S2|C|1562
3JAN|1|S2|G|1563
*
3JAN|1|S2|C|1572
3JAN|1|S2|G|1573
3JAN|1|S2|C|1574
3JAN|1|S2|G|1575

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain ST

Ribosomal protein eS19