IL_3JAN_230

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_230 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.117

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JAN|1|S2|G|1702
3JAN|1|S2|C|1703
3JAN|1|S2|C|1704
3JAN|1|S2|C|1705
*
3JAN|1|S2|G|1829
3JAN|1|S2|U|1830
3JAN|1|S2|A|1831
3JAN|1|S2|A|1832
3JAN|1|S2|C|1833

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain n

Ribosomal protein eL41