IL_3JAN_236
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GGUUUA*UUGACU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_236 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3469
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JAN|1|S2|G|1726
3JAN|1|S2|G|1727
3JAN|1|S2|U|1728
3JAN|1|S2|U|1729
3JAN|1|S2|U|1730
3JAN|1|S2|A|1731
*
3JAN|1|S2|U|1803
3JAN|1|S2|U|1804
3JAN|1|S2|G|1805
3JAN|1|S2|A|1806
3JAN|1|S2|C|1807
3JAN|1|S2|U|1808
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SI
- Ribosomal protein eS8
- Chain V
- Ribosomal protein uL14
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