IL_3JAN_254

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GACC*GGGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_254 not in the Motif Atlas

Geometric match to IL_1HYS_004

Geometric discrepancy: 0.303

The information below is about IL_1HYS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3JAN|1|5|G|1094
3JAN|1|5|A|1095
3JAN|1|5|C|1096
3JAN|1|5|C|1097
*
3JAN|1|5|G|1198
3JAN|1|5|G|1199
3JAN|1|5|G|1200
3JAN|1|5|U|1201
3JAN|1|5|C|1202

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S

Ribosomal protein eL20

Chain T

Ribosomal protein eL21