3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CGCCGG*CCGCG
Length
11 nucleotides
Bulged bases
3JAN|1|5|C|2084
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAN_262 not in the Motif Atlas
Geometric match to IL_7VYX_004
Geometric discrepancy: 0.3324
The information below is about IL_7VYX_004
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

3JAN|1|5|C|2081
3JAN|1|5|G|2082
3JAN|1|5|C|2083
3JAN|1|5|C|2084
3JAN|1|5|G|2085
3JAN|1|5|G|2086
*
3JAN|1|5|C|2271
3JAN|1|5|C|2272
3JAN|1|5|G|2273
3JAN|1|5|C|2274
3JAN|1|5|G|2275

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain C
Ribosomal protein uL4
Chain F
Ribosomal protein uL30
Chain Q
Ribosomal protein eL18
Chain e
Ribosomal protein eL32
Chain r
Ribosomal protein eL28

Coloring options:


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