IL_3JAN_262

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGCCGG*CCGCG

Length

11 nucleotides

Bulged bases

3JAN|1|5|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_262 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3324

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

3JAN|1|5|C|2081
3JAN|1|5|G|2082
3JAN|1|5|C|2083
3JAN|1|5|C|2084
3JAN|1|5|G|2085
3JAN|1|5|G|2086
*
3JAN|1|5|C|2271
3JAN|1|5|C|2272
3JAN|1|5|G|2273
3JAN|1|5|C|2274
3JAN|1|5|G|2275

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain F

Ribosomal protein uL30

Chain Q

Ribosomal protein eL18

Chain e

Ribosomal protein eL32

Chain r

Ribosomal protein eL28