IL_3JAN_275
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CUUGA*UACAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_275 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3518
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
3JAN|1|5|C|4294
3JAN|1|5|U|4295
3JAN|1|5|U|4296
3JAN|1|5|G|4297
3JAN|1|5|A|4298
*
3JAN|1|5|U|4312
3JAN|1|5|A|4313
3JAN|1|5|C|4314
3JAN|1|5|A|4315
3JAN|1|5|G|4316
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain D
- Ribosomal protein uL18
- Chain Q
- Ribosomal protein eL18
- Chain T
- Ribosomal protein eL21
- Chain b
- Ribosomal protein eL29
- Chain o
- Ribosomal protein eL42
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