IL_3JAN_276

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCAAGC*GCGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_276 not in the Motif Atlas

Geometric match to IL_8CRE_028

Geometric discrepancy: 0.3685

The information below is about IL_8CRE_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

3JAN|1|5|C|4412
3JAN|1|5|C|4413
3JAN|1|5|A|4414
3JAN|1|5|A|4415
3JAN|1|5|G|4416
3JAN|1|5|C|4417
*
3JAN|1|5|G|4425
3JAN|1|5|C|4426
3JAN|1|5|G|4427
3JAN|1|5|A|4428
3JAN|1|5|C|4429
3JAN|1|5|G|4430

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein uL16

Chain m

Ribosomal protein eL40