IL_3JAN_282
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CACC*GGUCG
- Length
- 9 nucleotides
- Bulged bases
- 3JAN|1|7|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_282 not in the Motif Atlas
- Geometric match to IL_1MFQ_004
- Geometric discrepancy: 0.2314
- The information below is about IL_1MFQ_004
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JAN|1|7|C|15
3JAN|1|7|A|16
3JAN|1|7|C|17
3JAN|1|7|C|18
*
3JAN|1|7|G|60
3JAN|1|7|G|61
3JAN|1|7|U|62
3JAN|1|7|C|63
3JAN|1|7|G|64
Current chains
- Chain 7
- 5S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Ribosomal protein uL18
- Chain I
- Ribosomal protein uL16
- Chain J
- Ribosomal protein uL5
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