3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UAUGGU*AACG
Length
10 nucleotides
Bulged bases
3JAN|1|S2|G|113, 3JAN|1|S2|G|114
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAN_285 not in the Motif Atlas
Homologous match to IL_8P9A_380
Geometric discrepancy: 0.469
The information below is about IL_8P9A_380
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77658.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
34

Unit IDs

3JAN|1|S2|U|110
3JAN|1|S2|A|111
3JAN|1|S2|U|112
3JAN|1|S2|G|113
3JAN|1|S2|G|114
3JAN|1|S2|U|115
*
3JAN|1|S2|A|348
3JAN|1|S2|A|349
3JAN|1|S2|C|350
3JAN|1|S2|G|351

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SE
Ribosomal protein eS4
Chain SI
Ribosomal protein eS8
Chain SL
Ribosomal protein uS17

Coloring options:


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