IL_3JAN_309
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CCCG*CGCGG
- Length
- 9 nucleotides
- Bulged bases
- 3JAN|1|5|C|143
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_309 not in the Motif Atlas
- Geometric match to IL_8CRE_434
- Geometric discrepancy: 0.3607
- The information below is about IL_8CRE_434
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
3JAN|1|5|C|124
3JAN|1|5|C|125
3JAN|1|5|C|126
3JAN|1|5|G|127
*
3JAN|1|5|C|141
3JAN|1|5|G|142
3JAN|1|5|C|143
3JAN|1|5|G|144
3JAN|1|5|G|145
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- Ribosomal protein eL8
- Chain N
- Ribosomal protein eL15
- Chain X
- Ribosomal protein uL23
- Chain h
- Ribosomal protein uL29
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