IL_3JAN_314

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AAUCC*GAGAUU

Length

11 nucleotides

Bulged bases

3JAN|1|5|A|3828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_314 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3243

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

3JAN|1|5|A|3629
3JAN|1|5|A|3630
3JAN|1|5|U|3631
3JAN|1|5|C|3632
3JAN|1|5|C|3633
*
3JAN|1|5|G|3827
3JAN|1|5|A|3828
3JAN|1|5|G|3829
3JAN|1|5|A|3830
3JAN|1|5|U|3831
3JAN|1|5|U|3832

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain n

Ribosomal protein eL41