IL_3JAP_042

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_042 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.127

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3JAP|1|2|G|870
3JAP|1|2|G|871
3JAP|1|2|U|872
3JAP|1|2|C|873
*
3JAP|1|2|G|952
3JAP|1|2|G|953
3JAP|1|2|A|954
3JAP|1|2|C|955

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain N

uS15

Chain b

eS27