IL_3JAP_054
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 3JAP|1|2|C|1157, 3JAP|1|2|C|1158
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAP_054 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1441
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
3JAP|1|2|A|1156
3JAP|1|2|C|1157
3JAP|1|2|C|1158
3JAP|1|2|A|1159
*
3JAP|1|2|U|1615
3JAP|1|2|C|1616
3JAP|1|2|C|1617
3JAP|1|2|C|1618
3JAP|1|2|U|1619
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- mRNA
- Chain F
- uS7
- Chain Q
- uS9
- Chain U
- uS10
- Chain a
- eS26
- Chain c
- eS28
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