IL_3JAP_096
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 3JAP|1|2|C|1273, 3JAP|1|2|U|1430, 3JAP|1|2|G|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAP_096 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1962
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JAP|1|2|U|1271
3JAP|1|2|G|1272
3JAP|1|2|C|1273
3JAP|1|2|A|1274
3JAP|1|2|U|1275
3JAP|1|2|G|1276
3JAP|1|2|G|1277
*
3JAP|1|2|U|1428
3JAP|1|2|C|1429
3JAP|1|2|U|1430
3JAP|1|2|G|1431
3JAP|1|2|U|1432
3JAP|1|2|G|1433
3JAP|1|2|A|1434
3JAP|1|2|U|1435
3JAP|1|2|G|1436
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS3
- Chain K
- eS10
- Chain U
- uS10
- Chain d
- uS14
- Chain f
- eS31
- Chain i
- eIF1A
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