IL_3JAQ_006

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UAUAAGC*GUGAAA

Length

13 nucleotides

Bulged bases

3JAQ|1|2|U|66, 3JAQ|1|2|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_006 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.3929

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

3JAQ|1|2|U|64
3JAQ|1|2|A|65
3JAQ|1|2|U|66
3JAQ|1|2|A|67
3JAQ|1|2|A|68
3JAQ|1|2|G|69
3JAQ|1|2|C|70
*
3JAQ|1|2|G|81
3JAQ|1|2|U|82
3JAQ|1|2|G|83
3JAQ|1|2|A|84
3JAQ|1|2|A|85
3JAQ|1|2|A|86

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain Y

eS24