IL_3JAQ_029
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 3JAQ|1|2|A|578, 3JAQ|1|2|U|580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAQ_029 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1804
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JAQ|1|2|G|561
3JAQ|1|2|U|562
3JAQ|1|2|G|563
3JAQ|1|2|C|564
3JAQ|1|2|C|565
3JAQ|1|2|A|566
3JAQ|1|2|G|567
*
3JAQ|1|2|C|574
3JAQ|1|2|G|575
3JAQ|1|2|G|576
3JAQ|1|2|U|577
3JAQ|1|2|A|578
3JAQ|1|2|A|579
3JAQ|1|2|U|580
3JAQ|1|2|U|581
3JAQ|1|2|C|582
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS3
- Chain X
- uS12
- Chain e
- eS30
- Chain i
- eIF1A
Coloring options: