3D structure

PDB id
3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex in open conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
6 Å

Loop

Sequence
GUAU*AGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAQ_040 not in the Motif Atlas
Homologous match to IL_4V88_432
Geometric discrepancy: 0.1633
The information below is about IL_4V88_432
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

3JAQ|1|2|G|884
3JAQ|1|2|U|885
3JAQ|1|2|A|886
3JAQ|1|2|U|887
*
3JAQ|1|2|A|923
3JAQ|1|2|G|924
3JAQ|1|2|A|925
3JAQ|1|2|C|926

Current chains

Chain 2
18S rRNA

Nearby chains

Chain B
eS1
Chain O
uS11
Chain a
eS26

Coloring options:


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