IL_3JAQ_052

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

3JAQ|1|2|C|1157, 3JAQ|1|2|C|1158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_052 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1441

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

3JAQ|1|2|A|1156
3JAQ|1|2|C|1157
3JAQ|1|2|C|1158
3JAQ|1|2|A|1159
*
3JAQ|1|2|U|1615
3JAQ|1|2|C|1616
3JAQ|1|2|C|1617
3JAQ|1|2|C|1618
3JAQ|1|2|U|1619

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain F

uS7

Chain Q

uS9

Chain U

uS10

Chain c

eS28

Chain j

eIF2 alpha