IL_3JB9_008
3D structure
- PDB id
- 3JB9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 3JB9|1|N|A|67, 3JB9|1|N|U|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JB9_008 not in the Motif Atlas
- Geometric match to IL_4WF9_096
- Geometric discrepancy: 0.1481
- The information below is about IL_4WF9_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
3JB9|1|N|C|55
3JB9|1|N|C|56
*
3JB9|1|N|G|66
3JB9|1|N|A|67
3JB9|1|N|U|68
3JB9|1|N|G|69
Current chains
- Chain N
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor spp42
- Chain M
- Pre-mRNA-processing protein 45
- Chain O
- RNA (5'-R(P*GP*UP*AP*UP*GP*UP*AP*U)-3')
- Chain R
- Pre-mRNA-splicing factor cwf4
- Chain W
- Pre-mRNA-splicing factor cdc5
- Chain c
- Pre-mRNA-splicing factor cwf19
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