IL_3JBN_011
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 3JBN|1|A|U|168
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_011 not in the Motif Atlas
- Geometric match to IL_4V88_394
- Geometric discrepancy: 0.1329
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
3JBN|1|A|G|141
3JBN|1|A|G|142
3JBN|1|A|A|143
3JBN|1|A|U|144
3JBN|1|A|A|145
3JBN|1|A|A|146
3JBN|1|A|C|147
*
3JBN|1|A|G|163
3JBN|1|A|C|164
3JBN|1|A|U|165
3JBN|1|A|A|166
3JBN|1|A|A|167
3JBN|1|A|U|168
3JBN|1|A|A|169
3JBN|1|A|C|170
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein eS24
- Chain H
- 40S ribosomal protein eS6
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