IL_3JBN_040

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_040 not in the Motif Atlas

Geometric match to IL_3D0U_004

Geometric discrepancy: 0.2037

The information below is about IL_3D0U_004

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

3JBN|1|A|A|933
3JBN|1|A|G|934
*
3JBN|1|A|C|1031
3JBN|1|A|A|1032
3JBN|1|A|U|1033
3JBN|1|A|U|1034

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 4

40S ribosomal protein eS27

Chain K

40S ribosomal protein uS8

Chain U

40S ribosomal protein uS15