IL_3JBN_054

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_054 not in the Motif Atlas

Geometric match to IL_3FOZ_001

Geometric discrepancy: 0.1169

The information below is about IL_3FOZ_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

3JBN|1|A|C|1274
3JBN|1|A|U|1275
3JBN|1|A|U|1276
*
3JBN|1|A|G|1710
3JBN|1|A|U|1711
3JBN|1|A|G|1712

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain M

40S ribosomal protein uS9

Chain S

40S ribosomal protein uS13

Chain Y

40S ribosomal protein eS19