IL_3JBN_063

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAU*AGGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_063 not in the Motif Atlas

Homologous match to IL_8C3A_465

Geometric discrepancy: 0.2143

The information below is about IL_8C3A_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76236.1

Basepair signature

cWW-tWH-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

3JBN|1|A|C|1635
3JBN|1|A|A|1636
3JBN|1|A|U|1637
*
3JBN|1|A|A|1653
3JBN|1|A|G|1654
3JBN|1|A|G|1655
3JBN|1|A|A|1656
3JBN|1|A|A|1657
3JBN|1|A|G|1658

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein uS7

Chain M

40S ribosomal protein uS9

Chain W

40S ribosomal protein eS17