IL_3JBN_072

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

3JBN|1|A|A|2048

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_072 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2848

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

3JBN|1|A|C|1941
3JBN|1|A|G|1942
3JBN|1|A|C|1943
*
3JBN|1|A|G|2046
3JBN|1|A|A|2047
3JBN|1|A|A|2048
3JBN|1|A|G|2049

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ag

60S ribosomal protein eL41

Chain Q

40S ribosomal protein uS12