IL_3JBN_081

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGGAC*GGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_081 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.203

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3JBN|1|A|U|1975
3JBN|1|A|G|1976
3JBN|1|A|G|1977
3JBN|1|A|A|1978
3JBN|1|A|C|1979
*
3JBN|1|A|G|2011
3JBN|1|A|G|2012
3JBN|1|A|A|2013
3JBN|1|A|A|2014
3JBN|1|A|A|2015

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain H

40S ribosomal protein eS6

Chain L

40S ribosomal protein eS8