IL_3JBN_098

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGAAAU*AUGGAUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_098 not in the Motif Atlas

Geometric match to IL_4WF9_001

Geometric discrepancy: 0.1052

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

3JBN|1|AA|C|414
3JBN|1|AA|U|415
3JBN|1|AA|G|416
3JBN|1|AA|A|417
3JBN|1|AA|A|418
3JBN|1|AA|A|419
3JBN|1|AA|U|420
*
3JBN|1|AC|A|17
3JBN|1|AC|U|18
3JBN|1|AC|G|19
3JBN|1|AC|G|20
3JBN|1|AC|A|21
3JBN|1|AC|U|22
3JBN|1|AC|G|23

Current chains

Chain AA

28S ribosomal RNA

Chain AC

5.8S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein eL32

Chain AW

60S ribosomal protein uL22