IL_3JBN_117

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_117 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0924

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

3JBN|1|AA|U|953
3JBN|1|AA|G|954
3JBN|1|AA|A|955
3JBN|1|AA|A|956
3JBN|1|AA|G|957
*
3JBN|1|AA|U|974
3JBN|1|AA|G|975
3JBN|1|AA|G|976
3JBN|1|AA|A|977
3JBN|1|AA|G|978

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AT

60S ribosomal protein eL19

Chain Ah

60S ribosomal protein eL43