IL_3JBN_133
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAUAAG*CGAUAC
- Length
- 12 nucleotides
- Bulged bases
- 3JBN|1|AA|U|1459
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_133 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2024
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
3JBN|1|AA|G|1294
3JBN|1|AA|A|1295
3JBN|1|AA|U|1296
3JBN|1|AA|A|1297
3JBN|1|AA|A|1298
3JBN|1|AA|G|1299
*
3JBN|1|AA|C|1456
3JBN|1|AA|G|1457
3JBN|1|AA|A|1458
3JBN|1|AA|U|1459
3JBN|1|AA|A|1460
3JBN|1|AA|C|1461
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein uL30
- Chain A8
- 60S ribosomal protein eL32
- Chain A9
- 60S ribosomal protein eL33
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AS
- 60S ribosomal protein eL18
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