IL_3JBN_142
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGUUGAAG*UGGAA
- Length
- 13 nucleotides
- Bulged bases
- 3JBN|1|AA|U|1539
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_142 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.3216
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
3JBN|1|AA|U|1536
3JBN|1|AA|G|1537
3JBN|1|AA|U|1538
3JBN|1|AA|U|1539
3JBN|1|AA|G|1540
3JBN|1|AA|A|1541
3JBN|1|AA|A|1542
3JBN|1|AA|G|1543
*
3JBN|1|AA|U|1563
3JBN|1|AA|G|1564
3JBN|1|AA|G|1565
3JBN|1|AA|A|1566
3JBN|1|AA|A|1567
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A8
- 60S ribosomal protein eL32
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- 60S ribosomal protein uL4
- Chain AZ
- 60S ribosomal protein uL24
Coloring options: