IL_3JBN_159

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUUUG*CUUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_159 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3316

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3JBN|1|AA|C|2036
3JBN|1|AA|U|2037
3JBN|1|AA|U|2038
3JBN|1|AA|U|2039
3JBN|1|AA|G|2040
*
3JBN|1|AA|C|2069
3JBN|1|AA|U|2070
3JBN|1|AA|U|2071
3JBN|1|AA|U|2072
3JBN|1|AA|G|2073

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A1

60S ribosomal protein eL27