IL_3JBN_163

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

3JBN|1|AA|G|2628

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_163 not in the Motif Atlas

Homologous match to IL_5TBW_077

Geometric discrepancy: 0.1962

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

3JBN|1|AA|A|2169
3JBN|1|AA|G|2170
3JBN|1|AA|U|2171
3JBN|1|AA|C|2172
3JBN|1|AA|G|2173
3JBN|1|AA|G|2174
*
3JBN|1|AA|C|2626
3JBN|1|AA|U|2627
3JBN|1|AA|G|2628
3JBN|1|AA|U|2629

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AM

60S ribosomal protein uL14