IL_3JBN_168

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAAAAG*UAUUAACA

Length

15 nucleotides

Bulged bases

3JBN|1|AA|A|2452, 3JBN|1|AA|A|2453, 3JBN|1|AA|U|2468, 3JBN|1|AA|C|2472

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_168 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1383

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

3JBN|1|AA|U|2449
3JBN|1|AA|G|2450
3JBN|1|AA|A|2451
3JBN|1|AA|A|2452
3JBN|1|AA|A|2453
3JBN|1|AA|A|2454
3JBN|1|AA|G|2455
*
3JBN|1|AA|U|2466
3JBN|1|AA|A|2467
3JBN|1|AA|U|2468
3JBN|1|AA|U|2469
3JBN|1|AA|A|2470
3JBN|1|AA|A|2471
3JBN|1|AA|C|2472
3JBN|1|AA|A|2473

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain AD

60S ribosomal protein uL2

Chain Ah

60S ribosomal protein eL43