IL_3JBN_175

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

3JBN|1|AA|A|2574, 3JBN|1|AA|C|2580, 3JBN|1|AA|C|2599

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_175 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.3144

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3JBN|1|AA|C|2570
3JBN|1|AA|C|2571
3JBN|1|AA|A|2572
3JBN|1|AA|A|2573
3JBN|1|AA|A|2574
3JBN|1|AA|U|2575
3JBN|1|AA|G|2576
3JBN|1|AA|C|2577
3JBN|1|AA|C|2578
3JBN|1|AA|U|2579
3JBN|1|AA|C|2580
3JBN|1|AA|G|2581
*
3JBN|1|AA|C|2597
3JBN|1|AA|G|2598
3JBN|1|AA|C|2599
3JBN|1|AA|G|2600

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Ag

60S ribosomal protein eL41