IL_3JBN_176
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCGG*UAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_176 not in the Motif Atlas
- Homologous match to IL_5TBW_091
- Geometric discrepancy: 0.1142
- The information below is about IL_5TBW_091
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.5
- Basepair signature
- cWW-cHS-cWW-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3JBN|1|AA|G|2684
3JBN|1|AA|C|2685
3JBN|1|AA|G|2686
3JBN|1|AA|G|2687
*
3JBN|1|AA|U|3345
3JBN|1|AA|A|3346
3JBN|1|AA|C|3347
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein uL3
- Chain AK
- 60S ribosomal protein uL13
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