IL_3JBN_191

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

3JBN|1|AA|U|3219

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_191 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.1647

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

3JBN|1|AA|G|3187
3JBN|1|AA|U|3188
3JBN|1|AA|G|3189
*
3JBN|1|AA|U|3217
3JBN|1|AA|U|3218
3JBN|1|AA|U|3219
3JBN|1|AA|U|3220
3JBN|1|AA|U|3221

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AQ

60S ribosomal protein uL16