IL_3JBN_202

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUGGUAC*GGAUUA

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_202 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.1547

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3JBN|1|AA|U|3405
3JBN|1|AA|U|3406
3JBN|1|AA|G|3407
3JBN|1|AA|G|3408
3JBN|1|AA|U|3409
3JBN|1|AA|A|3410
3JBN|1|AA|C|3411
*
3JBN|1|AA|G|3416
3JBN|1|AA|G|3417
3JBN|1|AA|A|3418
3JBN|1|AA|U|3419
3JBN|1|AA|U|3420
3JBN|1|AA|A|3421

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein uL6

Chain AM

60S ribosomal protein uL14

Chain Af

60S ribosomal protein eL40