IL_3JBN_207

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUGCUAAU*AA

Length

11 nucleotides

Bulged bases

3JBN|1|AA|U|3555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_207 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1468

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

3JBN|1|AA|U|3554
3JBN|1|AA|U|3555
3JBN|1|AA|U|3567
3JBN|1|AA|G|3568
3JBN|1|AA|C|3569
3JBN|1|AA|U|3570
3JBN|1|AA|A|3571
3JBN|1|AA|A|3572
3JBN|1|AA|U|3573
*
3JBN|1|AA|A|3674
3JBN|1|AA|A|3675

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A9

60S ribosomal protein eL33

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AW

60S ribosomal protein uL22