IL_3JBN_211

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUUU*AGCUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_211 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3654

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

3JBN|1|AA|U|3629
3JBN|1|AA|U|3630
3JBN|1|AA|U|3631
3JBN|1|AA|U|3632
3JBN|1|AA|U|3633
*
3JBN|1|AA|A|3652
3JBN|1|AA|G|3653
3JBN|1|AA|C|3654
3JBN|1|AA|U|3655
3JBN|1|AA|A|3656

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein eL6

Chain AN

60S ribosomal protein eL14