IL_3JBN_222

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_222 not in the Motif Atlas

Geometric match to IL_7RQB_114

Geometric discrepancy: 0.136

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

3JBN|1|AB|A|32
3JBN|1|AB|U|33
3JBN|1|AB|C|34
3JBN|1|AB|C|35
3JBN|1|AB|C|36
*
3JBN|1|AB|G|41
3JBN|1|AB|A|42
3JBN|1|AB|A|43
3JBN|1|AB|C|44
3JBN|1|AB|U|45

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AG

60S ribosomal protein uL5

Chain AR

60S ribosomal protein uL18