IL_3JBN_223
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCUAGUAC*GGAACAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_223 not in the Motif Atlas
- Geometric match to IL_7A0S_007
- Geometric discrepancy: 0.1425
- The information below is about IL_7A0S_007
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
3JBN|1|AB|G|71
3JBN|1|AB|C|72
3JBN|1|AB|U|73
3JBN|1|AB|A|74
3JBN|1|AB|G|75
3JBN|1|AB|U|76
3JBN|1|AB|A|77
3JBN|1|AB|C|78
*
3JBN|1|AB|G|98
3JBN|1|AB|G|99
3JBN|1|AB|A|100
3JBN|1|AB|A|101
3JBN|1|AB|C|102
3JBN|1|AB|A|103
3JBN|1|AB|C|104
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein uL30
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 60S ribosomal protein uL16
- Chain AR
- 60S ribosomal protein uL18
- Chain AU
- 60S ribosomal protein eL20
- Chain AV
- 60S ribosomal protein eL21
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